Detailed information of SNP:
|
SNP ID:
sf0621628916(Gbrowse)
Chromosome: chr06 Position: 21628916 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 82.21% | 17.79% |
| All Indica | 794 | 80.73% | 19.27% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 207 | 63.29% | 36.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621628916 | A->G | INTERGENIC | None |