Detailed information of SNP:
|
SNP ID:
sf0621648785(Gbrowse)
Chromosome: chr06 Position: 21648785 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 82.07% | 17.93% |
| All Indica | 799 | 81.73% | 18.27% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621648785 | A->G | INTERGENIC | None |