Detailed information of SNP:
|
SNP ID:
sf0621675447(Gbrowse)
Chromosome: chr06 Position: 21675447 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 73.97% | 26.03% |
| All Indica | 793 | 87.77% | 12.23% |
| All Japonica | 491 | 46.84% | 53.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 206 | 80.58% | 19.42% |
| Temperate Japonica | 329 | 29.18% | 70.82% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621675447 | T->C | INTERGENIC | None |