Detailed information of SNP:
|
SNP ID:
sf0621675844(Gbrowse)
Chromosome: chr06 Position: 21675844 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 95.55% | 4.45% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 495 | 89.90% | 10.10% |
| Aus | 11 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 52.17% | 47.83% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621675844 | G->A | INTERGENIC | None |