Detailed information of SNP:
|
SNP ID:
sf0621679838(Gbrowse)
Chromosome: chr06 Position: 21679838 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 52.78% | 47.22% |
| All Indica | 788 | 79.95% | 20.05% |
| All Japonica | 473 | 16.91% | 83.09% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 206 | 76.70% | 23.30% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 324 | 4.63% | 95.37% |
| Tropical Japonica | 84 | 66.67% | 33.33% |
| Japonica Intermediate | 65 | 13.85% | 86.15% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621679838 | C->T | LOC_Os06g36800(LOC_Os06g36800.1) | INTRON |