Detailed information of SNP:
|
SNP ID:
sf0621704845(Gbrowse)
Chromosome: chr06 Position: 21704845 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.05% | 25.95% |
| All Indica | 798 | 85.96% | 14.04% |
| All Japonica | 497 | 68.41% | 31.59% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 59.10% | 40.90% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621704845 | T->C | INTERGENIC | None |