Detailed information of SNP:
|
SNP ID:
sf0621727625(Gbrowse)
Chromosome: chr06 Position: 21727625 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 83.30% | 16.70% |
| All Indica | 799 | 86.36% | 13.64% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621727625 | A->G | INTERGENIC | None |