Detailed information of SNP:
|
SNP ID:
sf0621760256(Gbrowse)
Chromosome: chr06 Position: 21760256 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 95.65% | 4.35% |
| All Indica | 761 | 99.61% | 0.39% |
| All Japonica | 472 | 88.35% | 11.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 352 | 100.00% | 0.00% |
| Indica II | 207 | 99.52% | 0.48% |
| Indica Intermediate | 202 | 99.01% | 0.99% |
| Temperate Japonica | 319 | 93.73% | 6.27% |
| Tropical Japonica | 89 | 83.15% | 16.85% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621760256 | C->T | INTERGENIC | None |