Detailed information of SNP:
|
SNP ID:
sf0621804305(Gbrowse)
Chromosome: chr06 Position: 21804305 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.61% | 19.39% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 497 | 77.06% | 22.94% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621804305 | G->A | INTERGENIC | None |