Detailed information of SNP:
|
SNP ID:
sf0621805977(Gbrowse)
Chromosome: chr06 Position: 21805977 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 79.25% | 20.75% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 496 | 76.61% | 23.39% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 334 | 72.16% | 27.84% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621805977 | G->A | INTERGENIC | None |