Detailed information of SNP:
|
SNP ID:
sf0621837553(Gbrowse)
Chromosome: chr06 Position: 21837553 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 95.36% | 4.64% |
| All Indica | 711 | 91.70% | 8.30% |
| All Japonica | 488 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 322 | 85.40% | 14.60% |
| Indica II | 194 | 99.48% | 0.52% |
| Indica Intermediate | 195 | 94.36% | 5.64% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0621837553 | A->T | INTERGENIC | None |