Detailed information of SNP:
|
SNP ID:
sf0622186290(Gbrowse)
Chromosome: chr06 Position: 22186290 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 62.72% | 37.28% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622186290 | C->T | INTERGENIC | None |