Detailed information of SNP:
|
SNP ID:
sf0622189411(Gbrowse)
Chromosome: chr06 Position: 22189411 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.04% | 44.96% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622189411 | G->A | INTERGENIC | None |