Detailed information of SNP:
|
SNP ID:
sf0622242127(Gbrowse)
Chromosome: chr06 Position: 22242127 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 96.30% | 3.70% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 464 | 89.44% | 10.56% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 94.29% | 5.71% |
| Tropical Japonica | 87 | 89.66% | 10.34% |
| Japonica Intermediate | 62 | 64.52% | 35.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622242127 | C->T | INTERGENIC | None |