Detailed information of SNP:
|
SNP ID:
sf0622248482(Gbrowse)
Chromosome: chr06 Position: 22248482 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 65.39% | 34.61% |
| All Indica | 790 | 98.23% | 1.77% |
| All Japonica | 477 | 7.55% | 92.45% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 205 | 97.07% | 2.93% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 75 | 10.67% | 89.33% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622248482 | A->G | LOC_Os06g37560(LOC_Os06g37560.1) | INTRON |