Detailed information of SNP:
|
SNP ID:
sf0622248531(Gbrowse)
Chromosome: chr06 Position: 22248531 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 55.14% | 44.86% |
| All Indica | 795 | 91.07% | 8.93% |
| All Japonica | 464 | 1.72% | 98.28% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 307 | 1.30% | 98.70% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 65 | 4.62% | 95.38% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622248531 | G->A | LOC_Os06g37560(LOC_Os06g37560.1) | INTRON |