Detailed information of SNP:
|
SNP ID:
sf0622249567(Gbrowse)
Chromosome: chr06 Position: 22249567 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 51.54% | 48.46% |
| All Indica | 785 | 85.10% | 14.90% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 368 | 93.48% | 6.52% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 204 | 75.00% | 25.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 9 | 22.22% | 77.78% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622249567 | C->T | LOC_Os06g37560(LOC_Os06g37560.1) | INTRON |