Detailed information of SNP:
|
SNP ID:
sf0622252730(Gbrowse)
Chromosome: chr06 Position: 22252730 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1314 | 53.50% | 46.50% |
| All Indica | 731 | 90.70% | 9.30% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 38 | 42.11% | 57.89% |
| Indica I | 353 | 95.75% | 4.25% |
| Indica II | 190 | 81.05% | 18.95% |
| Indica Intermediate | 188 | 90.96% | 9.04% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 9 | 0.00% | 100.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622252730 | G->C | INTERGENIC | None |