Detailed information of SNP:
|
SNP ID:
sf0622280783(Gbrowse)
Chromosome: chr06 Position: 22280783 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.92% | 11.08% |
| All Indica | 798 | 85.84% | 14.16% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 73.33% | 26.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622280783 | C->A | LOC_Os06g37630(LOC_Os06g37630.1) | INTRON |