Detailed information of SNP:
|
SNP ID:
sf0622288912(Gbrowse)
Chromosome: chr06 Position: 22288912 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 60.86% | 39.14% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622288912 | C->T | INTERGENIC | None |