Detailed information of SNP:
|
SNP ID:
sf0622301009(Gbrowse)
Chromosome: chr06 Position: 22301009 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 50.92% | 49.08% |
| All Indica | 777 | 20.21% | 79.79% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 38 | 50.00% | 50.00% |
| Indica I | 374 | 16.58% | 83.42% |
| Indica II | 193 | 13.47% | 86.53% |
| Indica Intermediate | 210 | 32.86% | 67.14% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622301009 | C->T | INTERGENIC | None |