Detailed information of SNP:
|
SNP ID:
sf0622301382(Gbrowse)
Chromosome: chr06 Position: 22301382 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.04% | 49.96% |
| All Indica | 799 | 21.15% | 78.85% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 17.07% | 82.93% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 211 | 33.18% | 66.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622301382 | G->A | INTERGENIC | None |