Detailed information of SNP:
|
SNP ID:
sf0622301572(Gbrowse)
Chromosome: chr06 Position: 22301572 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.38% | 48.62% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622301572 | G->A | INTERGENIC | None |