Detailed information of SNP:
|
SNP ID:
sf0622321011(Gbrowse)
Chromosome: chr06 Position: 22321011 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 61.51% | 38.49% |
| All Indica | 785 | 33.25% | 66.75% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 21.80% | 78.20% |
| Indica II | 210 | 38.57% | 61.43% |
| Indica Intermediate | 208 | 48.08% | 51.92% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622321011 | G->A | INTERGENIC | None |