Detailed information of SNP:
|
SNP ID:
sf0622340256(Gbrowse)
Chromosome: chr06 Position: 22340256 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1264 | 81.57% | 18.43% |
| All Indica | 663 | 74.66% | 25.34% |
| All Japonica | 485 | 89.07% | 10.93% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 296 | 69.93% | 30.07% |
| Indica II | 193 | 86.01% | 13.99% |
| Indica Intermediate | 174 | 70.11% | 29.89% |
| Temperate Japonica | 329 | 96.96% | 3.04% |
| Tropical Japonica | 88 | 54.55% | 45.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622340256 | C->T | LOC_Os06g37720(LOC_Os06g37720.1) | Synonymous |