Detailed information of SNP:
|
SNP ID:
sf0622352557(Gbrowse)
Chromosome: chr06 Position: 22352557 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 72.83% | 27.17% |
| All Indica | 798 | 79.57% | 20.43% |
| All Japonica | 496 | 61.09% | 38.91% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 68.96% | 31.04% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622352557 | T->C | LOC_Os06g37750(LOC_Os06g37750.1) | Non-Synonymous SNP |