Detailed information of SNP:
|
SNP ID:
sf0622358916(Gbrowse)
Chromosome: chr06 Position: 22358916 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.47% | 45.53% |
| All Indica | 799 | 80.98% | 19.02% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622358916 | G->A | LOC_Os06g37760(LOC_Os06g37760.1) | INTRON |