Detailed information of SNP:
|
SNP ID:
sf0622360476(Gbrowse)
Chromosome: chr06 Position: 22360476 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 79.41% | 20.59% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 496 | 56.65% | 43.35% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 62.99% | 37.01% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622360476 | C->T | LOC_Os06g37770(LOC_Os06g37770.1) | Non-Synonymous SNP |