Detailed information of SNP:
|
SNP ID:
sf0622364882(Gbrowse)
Chromosome: chr06 Position: 22364882 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1265 | 71.78% | 28.22% |
| All Indica | 670 | 81.94% | 18.06% |
| All Japonica | 491 | 58.66% | 41.34% |
| Aus | 55 | 72.73% | 27.27% |
| Indica I | 306 | 77.78% | 22.22% |
| Indica II | 179 | 83.24% | 16.76% |
| Indica Intermediate | 185 | 87.57% | 12.43% |
| Temperate Japonica | 334 | 63.47% | 36.53% |
| Tropical Japonica | 91 | 59.34% | 40.66% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 10 | 30.00% | 70.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622364882 | C->T | LOC_Os06g37790(LOC_Os06g37790.1) | Non-Synonymous SNP |