Detailed information of SNP:
|
SNP ID:
sf0622373531(Gbrowse)
Chromosome: chr06 Position: 22373531 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.16% | 23.84% |
| All Indica | 798 | 79.82% | 20.18% |
| All Japonica | 497 | 66.20% | 33.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 335 | 53.43% | 46.57% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622373531 | T->C | INTERGENIC | None |