Detailed information of SNP:
|
SNP ID:
sf0622376376(Gbrowse)
Chromosome: chr06 Position: 22376376 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 94.10% | 5.90% |
| All Indica | 722 | 89.20% | 10.80% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 84.86% | 15.14% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 166 | 86.14% | 13.86% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622376376 | C->T | LOC_Os06g37820(LOC_Os06g37820.1) | Non-Synonymous SNP |