Detailed information of SNP:
|
SNP ID:
sf0622382387(Gbrowse)
Chromosome: chr06 Position: 22382387 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 60.70% | 39.30% |
| All Indica | 799 | 77.35% | 22.65% |
| All Japonica | 475 | 29.05% | 70.95% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 75.20% | 24.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 314 | 26.11% | 73.89% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622382387 | A->G | LOC_Os06g37820(LOC_Os06g37820.1) | INTRON |