Detailed information of SNP:
|
SNP ID:
sf0622383187(Gbrowse)
Chromosome: chr06 Position: 22383187 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 54.37% | 45.63% |
| All Indica | 788 | 90.74% | 9.26% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 367 | 97.55% | 2.45% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622383187 | G->A | LOC_Os06g37820(LOC_Os06g37820.1) | INTRON |