Detailed information of SNP:
|
SNP ID:
sf0622415628(Gbrowse)
Chromosome: chr06 Position: 22415628 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.45% | 38.55% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622415628 | T->C | LOC_Os06g37860(LOC_Os06g37860.1) | Non-Synonymous SNP |