Detailed information of SNP:
|
SNP ID:
sf0622435579(Gbrowse)
Chromosome: chr06 Position: 22435579 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1263 | 72.68% | 27.32% |
| All Indica | 661 | 78.67% | 21.33% |
| All Japonica | 485 | 65.36% | 34.64% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 314 | 83.44% | 16.56% |
| Indica II | 168 | 67.26% | 32.74% |
| Indica Intermediate | 179 | 81.01% | 18.99% |
| Temperate Japonica | 326 | 74.54% | 25.46% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 66 | 33.33% | 66.67% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622435579 | C->T | LOC_Os06g37890(LOC_Os06g37890.1) | SNPs that introduce stop codons |