Detailed information of SNP:
|
SNP ID:
sf0622462132(Gbrowse)
Chromosome: chr06 Position: 22462132 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 56.52% | 43.48% |
| All Indica | 791 | 27.81% | 72.19% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 372 | 19.09% | 80.91% |
| Indica II | 208 | 28.37% | 71.63% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622462132 | G->A | INTERGENIC | None |