Detailed information of SNP:
|
SNP ID:
sf0622463769(Gbrowse)
Chromosome: chr06 Position: 22463769 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 88.06% | 11.94% |
| All Indica | 798 | 80.58% | 19.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 38 | 89.47% | 10.53% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622463769 | A->G | INTERGENIC | None |