Detailed information of SNP:
|
SNP ID:
sf0622506211(Gbrowse)
Chromosome: chr06 Position: 22506211 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 88.50% | 11.50% |
| All Indica | 791 | 97.22% | 2.78% |
| All Japonica | 497 | 72.64% | 27.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 97.02% | 2.98% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 60.90% | 39.10% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622506211 | T->G | LOC_Os06g38062(LOC_Os06g38062.1) | Non-Synonymous SNP |