Detailed information of SNP:
|
SNP ID:
sf0622507182(Gbrowse)
Chromosome: chr06 Position: 22507182 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1282 | 92.36% | 7.64% |
| All Indica | 671 | 85.84% | 14.16% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 302 | 83.11% | 16.89% |
| Indica II | 180 | 88.89% | 11.11% |
| Indica Intermediate | 189 | 87.30% | 12.70% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622507182 | C->G | LOC_Os06g38062(LOC_Os06g38062.1) | Non-Synonymous SNP |