Detailed information of SNP:
|
SNP ID:
sf0622508234(Gbrowse)
Chromosome: chr06 Position: 22508234 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 91.16% | 8.84% |
| All Indica | 783 | 85.44% | 14.56% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 87.57% | 12.43% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 204 | 75.98% | 24.02% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622508234 | C->T | INTERGENIC | None |