Detailed information of SNP:
|
SNP ID:
sf0622509572(Gbrowse)
Chromosome: chr06 Position: 22509572 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 79.71% | 20.29% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 450 | 43.78% | 56.22% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 306 | 49.67% | 50.33% |
| Tropical Japonica | 83 | 44.58% | 55.42% |
| Japonica Intermediate | 61 | 13.11% | 86.89% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622509572 | G->C | INTERGENIC | None |