Detailed information of SNP:
|
SNP ID:
sf0622509884(Gbrowse)
Chromosome: chr06 Position: 22509884 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1283 | 77.32% | 22.68% |
| All Indica | 672 | 59.97% | 40.03% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 293 | 63.48% | 36.52% |
| Indica II | 194 | 51.55% | 48.45% |
| Indica Intermediate | 185 | 63.24% | 36.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622509884 | G->A | LOC_Os06g38070(LOC_Os06g38070.1) | Synonymous |