Detailed information of SNP:



SNP ID: sf0622511121(Gbrowse)

Chromosome: chr06

Position: 22511121
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1395 59.00% 41.00%
All Indica788 74.24% 25.76%
All Japonica485 30.72% 69.28%
Aus67 79.10% 20.90%
Indica I372 81.72% 18.28%
Indica II209 77.03% 22.97%
Indica Intermediate207 57.97% 42.03%
Temperate Japonica325 42.46% 57.54%
Tropical Japonica93 8.60% 91.40%
Japonica Intermediate67 4.48% 95.52%
Group VI/Aromatic14 64.29% 35.71%
Intermediate41 65.85% 34.15%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0622511121 T->C LOC_Os06g38070(LOC_Os06g38070.1) Non-Synonymous SNP