Detailed information of SNP:
SNP ID:
sf0622511121(Gbrowse)
Chromosome: chr06 Position: 22511121 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1395 | 59.00% | 41.00% |
All Indica | 788 | 74.24% | 25.76% |
All Japonica | 485 | 30.72% | 69.28% |
Aus | 67 | 79.10% | 20.90% |
Indica I | 372 | 81.72% | 18.28% |
Indica II | 209 | 77.03% | 22.97% |
Indica Intermediate | 207 | 57.97% | 42.03% |
Temperate Japonica | 325 | 42.46% | 57.54% |
Tropical Japonica | 93 | 8.60% | 91.40% |
Japonica Intermediate | 67 | 4.48% | 95.52% |
Group VI/Aromatic | 14 | 64.29% | 35.71% |
Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0622511121 | T->C | LOC_Os06g38070(LOC_Os06g38070.1) | Non-Synonymous SNP |