Detailed information of SNP:
|
SNP ID:
sf0622527907(Gbrowse)
Chromosome: chr06 Position: 22527907 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 64.17% | 35.83% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 497 | 8.05% | 91.95% |
| Aus | 34 | 64.71% | 35.29% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 7 | 14.29% | 85.71% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622527907 | A->G | LOC_Os06g38090(LOC_Os06g38090.1) | INTRON |