Detailed information of SNP:
|
SNP ID:
sf0622529815(Gbrowse)
Chromosome: chr06 Position: 22529815 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 97.17% | 2.83% |
| All Indica | 760 | 95.26% | 4.74% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 357 | 94.12% | 5.88% |
| Indica II | 200 | 95.50% | 4.50% |
| Indica Intermediate | 203 | 97.04% | 2.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622529815 | C->T | LOC_Os06g38090(LOC_Os06g38090.1) | INTRON |