Detailed information of SNP:



SNP ID: sf0622532132(Gbrowse)

Chromosome: chr06

Position: 22532132
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1419 98.73% 1.27%
All Indica799 100.00% 0.00%
All Japonica497 96.58% 3.42%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 82.98% 17.02%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0622532132 A->C LOC_Os06g38090(LOC_Os06g38090.1) INTRON