Detailed information of SNP:
|
SNP ID:
sf0622580643(Gbrowse)
Chromosome: chr06 Position: 22580643 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 51.58% | 48.42% |
| All Indica | 781 | 33.03% | 66.97% |
| All Japonica | 492 | 87.60% | 12.40% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 364 | 37.64% | 62.36% |
| Indica II | 210 | 25.71% | 74.29% |
| Indica Intermediate | 207 | 32.37% | 67.63% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 91 | 54.95% | 45.05% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622580643 | T->C | INTERGENIC | None |