Detailed information of SNP:
|
SNP ID:
sf0622580965(Gbrowse)
Chromosome: chr06 Position: 22580965 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 85.46% | 14.54% |
| All Indica | 782 | 80.56% | 19.44% |
| All Japonica | 493 | 94.73% | 5.27% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 363 | 82.09% | 17.91% |
| Indica II | 210 | 78.57% | 21.43% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 75.82% | 24.18% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622580965 | T->C | INTERGENIC | None |