Detailed information of SNP:
|
SNP ID:
sf0622626473(Gbrowse)
Chromosome: chr06 Position: 22626473 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 95.68% | 4.32% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 490 | 88.78% | 11.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 329 | 87.54% | 12.46% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622626473 | G->A | LOC_Os06g38240(LOC_Os06g38240.1) | Synonymous |