Detailed information of SNP:
|
SNP ID:
sf0622628243(Gbrowse)
Chromosome: chr06 Position: 22628243 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 97.72% | 2.28% |
| All Indica | 787 | 97.84% | 2.16% |
| All Japonica | 493 | 97.36% | 2.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 332 | 96.99% | 3.01% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0622628243 | T->C | LOC_Os06g38240(LOC_Os06g38240.1) | Synonymous |